If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ), 'gf_id' => 'HOM05D000993', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000993' ), 'data_identifier' => 'HOM05D000993', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000993', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30890' => 'bna', 'A01p41080' => 'bna', 'A03p65160' => 'bna', 'A05p03790' => 'bna', 'A05p43380' => 'bna', 'A07p07930' => 'bna', 'A08p22650' => 'bna', 'Aa31LG5G14570' => 'aar', 'Aa31LG6G14340' => 'aar', 'Aa31LG8G11110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1959' => 'aag', 'Actinidia02359' => 'ach', 'Actinidia09405' => 'ach', 'Actinidia10196' => 'ach', 'Actinidia16445' => 'ach', 'Actinidia17294' => 'ach', 'Actinidia20340' => 'ach', 'Actinidia21239' => 'ach', 'Actinidia22692' => 'ach', 'Ah.03g146380' => 'amhyb', 'Ah.04g153040' => 'amhyb', 'Ah.10g029130' => 'amhyb', 'Ah.14g081470' => 'amhyb', 'AL3G13900' => 'aly', 'AL3G39850' => 'aly', 'AL7G13320' => 'aly', 'Aqoxy4G02130' => 'aox', 'Aqoxy6G02642' => 'aox', 'Aqoxy6G02768' => 'aox', 'Aqoxy6G02769' => 'aox', 'Aqoxy6G02770' => 'aox', 'Aqoxy7G01823' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L91FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E4AL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3J1LPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5148EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6677MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Q1F66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP5B92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAK3I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NALL13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS1SX0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGWA1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZC8RT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SUGY7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6SX92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV31WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WUED23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y229LN' => 'arhy', 'AT3G03990' => 'ath', 'AT3G24420' => 'ath', 'AT4G37470' => 'ath', 'ATR0037G031' => 'atr', 'ATR0208G023' => 'atr', 'ATR0661G218' => 'atr', 'ATR0661G356' => 'atr', 'ATR0661G430' => 'atr', 'ATR0661G496' => 'atr', 'Atru.chr13.825' => 'acertr', 'Atru.chr2.1246' => 'acertr', 'Atru.chr3.209' => 'acertr', 'Atru.chr3.405' => 'acertr', 'Atru.chr3.407' => 'acertr', 'Atru.chr6.2338' => 'acertr', 'Atru.chr7.1303' => 'acertr', 'AUR62003965' => 'cqu', 'AUR62011022' => 'cqu', 'AUR62015203' => 'cqu', 'AUR62017666' => 'cqu', 'AUR62033395' => 'cqu', 'AUR62038280' => 'cqu', 'BcaB03g12342' => 'bca', 'BcaB04g20388' => 'bca', 'BcaB06g26624' => 'bca', 'BcaC01g00402' => 'bca', 'BcaC02g12389' => 'bca', 'BcaC02g12390' => 'bca', 'BcaC05g29886' => 'bca', 'BcaC05g30299' => 'bca', 'BcaC06g35695' => 'bca', 'BcaNung02056' => 'bca', 'BcaNung02057' => 'bca', 'BcaNung02058' => 'bca', 'BcaNung02942' => 'bca', 'BcaNung04535' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00630' => 'bna', 'BolC1t03876H' => 'bol', 'BolC1t05774H' => 'bol', 'BolC3t20176H' => 'bol', 'BolC4t22082H' => 'bol', 'BolC5t34960H' => 'bol', 'BolC7t41668H' => 'bol', 'BolC7t46656H' => 'bol', 'BraA01t03217Z' => 'bra', 'BraA01t04541Z' => 'bra', 'BraA03t15574Z' => 'bra', 'BraA05t19367Z' => 'bra', 'BraA05t23078Z' => 'bra', 'BraA07t28582Z' => 'bra', 'BraA08t34232Z' => 'bra', 'C01p39270' => 'bna', 'C03p79330' => 'bna', 'C04p04490' => 'bna', 'C05p63080' => 'bna', 'C07p11940' => 'bna', 'C07p62410' => 'bna', 'CAN.G1075.5' => 'can', 'CAN.G1075.6' => 'can', 'CAN.G1331.4' => 'can', 'CAN.G1331.6' => 'can', 'CAN.G724.21' => 'can', 'CANSAT01G2109' => 'cansat', 'CANSAT25G1529' => 'cansat', 'CANSAT56G1797' => 'cansat', 'CANSAT56G4444' => 'cansat', 'CANSAT64G0362' => 'cansat', 'CANSAT64G1665' => 'cansat', 'CARHR078130' => 'chi', 'CARHR100510' => 'chi', 'CARHR245870' => 'chi', 'Carub.0003s0324' => 'cru', 'Carub.0003s2472' => 'cru', 'Carub.0007s0281' => 'cru', 'Ca_13205_v3' => 'car', 'Ca_13219_v3' => 'car', 'Ca_13934_v3' => 'car', 'Ca_24711_v3' => 'car', 'Ca_24726_v3' => 'car', 'CBR_g30614' => 'cbr', 'CBR_g36325' => 'cbr', 'Cc06_g09370' => 'ccan', 'Cc06_g23240' => 'ccan', 'Cc07_g06710' => 'ccan', 'Cc07_g06720' => 'ccan', 'Cc10_g05740' => 'ccan', 'CDE02G2716' => 'cde', 'CDE04G1401' => 'cde', 'CDE04G2402' => 'cde', 'CDE06G1979' => 'cde', 'CDE07G0148' => 'cde', 'CDE07G2008' => 'cde', 'Cfa003288' => 'cfa', 'Cfa004091' => 'cfa', 'Cfa004092' => 'cfa', 'Cfa005268' => 'cfa', 'Cfa013784' => 'cfa', 'Ciclev10002180m.g' => 'ccl', 'Ciclev10009167m.g' => 'ccl', 'Ciclev10026256m.g' => 'ccl', 'Ciclev10026257m.g' => 'ccl', 'Ciclev10026274m.g' => 'ccl', 'CiPaw.01G008000' => 'cil', 'CiPaw.02G004900' => 'cil', 'CiPaw.03G234900' => 'cil', 'CiPaw.04G166900' => 'cil', 'CiPaw.07G175400' => 'cil', 'CiPaw.08G050200' => 'cil', 'ClCG00G002590' => 'cla', 'ClCG01G017270' => 'cla', 'ClCG02G012420' => 'cla', 'ClCG06G010390' => 'cla', 'ClCG08G016430' => 'cla', 'ClCG10G017800' => 'cla', 'COL.COLO4_11524' => 'col', 'COL.COLO4_28512' => 'col', 'COL.COLO4_29435' => 'col', 'COL.COLO4_34882' => 'col', 'Cpa.g.sc1323.3' => 'cpa', 'Cpa.g.sc23.136' => 'cpa', 'Cpa.g.sc6.57' => 'cpa', 'Cpa.g.sc85.19' => 'cpa', 'CsaV3_1G030830' => 'csa', 'CsaV3_2G016550' => 'csa', 'CsaV3_2G026180' => 'csa', 'CsaV3_3G038500' => 'csa', 'CsaV3_6G043810' => 'csa', 'CsaV3_7G005540' => 'csa', 'CSS0000088' => 'camsi', 'CSS0003765' => 'camsi', 'CSS0004232' => 'camsi', 'CSS0005349' => 'camsi', 'CSS0006927' => 'camsi', 'CSS0023429' => 'camsi', 'CSS0027939' => 'camsi', 'CSS0034108' => 'camsi', 'CSS0034648' => 'camsi', 'CSS0038802' => 'camsi', 'CSS0048758' => 'camsi', 'DCAR_009882' => 'dca', 'DCAR_010837' => 'dca', 'DCAR_012087' => 'dca', 'DCAR_017602' => 'dca', 'Dinv24031' => 'din', 'Dinv26892' => 'din', 'Dinv26893' => 'din', 'Dinv30061' => 'din', 'Dinv36605' => 'din', 'Dinv39226' => 'din', 'Dinv41579' => 'din', 'Dinv44957' => 'din', 'Dinv44981' => 'din', 'Duzib041G0731' => 'dzi', 'Duzib093G0567' => 'dzi', 'Duzib116G0438' => 'dzi', 'Duzib147G1271' => 'dzi', 'Duzib150G1272' => 'dzi', 'Duzib168G1721' => 'dzi', 'Duzib187G1079' => 'dzi', 'ECA232G3010' => 'eca', 'ECA236G0936' => 'eca', 'ECA246G4323' => 'eca', 'ECA247G2676' => 'eca', 'EL10Ac1g02387' => 'bvu', 'EL10Ac6g15664' => 'bvu', 'EL10Ac8g18533' => 'bvu', 'Eucgr.C01073' => 'egr', 'Eucgr.C01074' => 'egr', 'Eucgr.C01075' => 'egr', 'Eucgr.C01454' => 'egr', 'Eucgr.C04133' => 'egr', 'Eucgr.F00478' => 'egr', 'Eucgr.F02254' => 'egr', 'Eucgr.H02271' => 'egr', 'Eucgr.K01876' => 'egr', 'Eucgr.K01878' => 'egr', 'Eucgr.L02080' => 'egr', 'FAN01G3068' => 'fan', 'FAN19G2072' => 'fan', 'FAN19G3049' => 'fan', 'FAN20G0157' => 'fan', 'FAN23G0567' => 'fan', 'FAN23G2881' => 'fan', 'FAN24G1161' => 'fan', 'FAN26G0215' => 'fan', 'FAN26G0414' => 'fan', 'FAN26G1245' => 'fan', 'FAN27G1223' => 'fan', 'FAN28G0312' => 'fan', 'FAN28G2799' => 'fan', 'FvH4_1g05320' => 'fve', 'FvH4_1g17110' => 'fve', 'FvH4_2g33160' => 'fve', 'Glyma.01G191200' => 'gma', 'Glyma.03G206800' => 'gma', 'Glyma.05G102800' => 'gma', 'Glyma.05G102900' => 'gma', 'Glyma.05G232500' => 'gma', 'Glyma.07G089300' => 'gma', 'Glyma.08G039900' => 'gma', 'Glyma.09G187700' => 'gma', 'Glyma.11G051000' => 'gma', 'Glyma.14G089000' => 'gma', 'Glyma.17G164400' => 'gma', 'Glyma.17G164500' => 'gma', 'Glyma.17G235300' => 'gma', 'Glyma.20G044100' => 'gma', 'Gohir.A02G153600' => 'ghi', 'Gohir.A05G021300' => 'ghi', 'Gohir.A05G209150' => 'ghi', 'Gohir.A06G023900' => 'ghi', 'Gohir.A06G060800' => 'ghi', 'Gohir.A09G130400' => 'ghi', 'Gohir.D03G026800' => 'ghi', 'Gohir.D05G022700' => 'ghi', 'Gohir.D05G022733' => 'ghi', 'Gohir.D05G022800' => 'ghi', 'Gohir.D05G212950' => 'ghi', 'Gohir.D06G021000' => 'ghi', 'Gohir.D06G059200' => 'ghi', 'Gohir.D09G126400' => 'ghi', 'Gorai.003G028500' => 'gra', 'Gorai.006G145200' => 'gra', 'Gorai.009G023000' => 'gra', 'Gorai.009G219500' => 'gra', 'Gorai.010G025600' => 'gra', 'Gorai.010G069000' => 'gra', 'GSVIVG01000162001' => 'vvi', 'GSVIVG01009348001' => 'vvi', 'GSVIVG01015425001' => 'vvi', 'GSVIVG01015426001' => 'vvi', 'GSVIVG01033429001' => 'vvi', 'HanXRQChr05g0138081' => 'han', 'HanXRQChr06g0180061' => 'han', 'HanXRQChr11g0322481' => 'han', 'HanXRQChr11g0325791' => 'han', 'HanXRQChr12g0373271' => 'han', 'HanXRQChr12g0381331' => 'han', 'Haze_15322' => 'cav', 'Haze_15323' => 'cav', 'Haze_20073' => 'cav', 'Haze_22444' => 'cav', 'Haze_25685' => 'cav', 'Hma1.2p1_0018F.1_g013180' => 'hma', 'Hma1.2p1_0239F.1_g099840' => 'hma', 'Hma1.2p1_0819F.1_g223740' => 'hma', 'HPP92_007678' => 'vpl', 'HPP92_009533' => 'vpl', 'HPP92_009548' => 'vpl', 'HPP92_013387' => 'vpl', 'HPP92_013402' => 'vpl', 'HPP92_026589' => 'vpl', 'Hund05304' => 'sun', 'Hund09114' => 'sun', 'Hund13927' => 'sun', 'Lalb_Chr05g0213491' => 'lal', 'Lalb_Chr14g0368241' => 'lal', 'Lalb_Chr14g0371341' => 'lal', 'Lalb_Chr16g0389081' => 'lal', 'Lalb_Chr22g0355641' => 'lal', 'Lalb_Chr24g0397621' => 'lal', 'Lalb_Chr24g0397631' => 'lal', 'Lj1A1135T84' => 'lonja', 'Lj2g0007403' => 'lja', 'Lj2g0008495' => 'lja', 'Lj4C70T9' => 'lonja', 'Lj4C917G6' => 'lonja', 'Lj4g0019758' => 'lja', 'Lj5g0010291' => 'lja', 'Lj5g0015705' => 'lja', 'Lj7A645G24' => 'lonja', 'Lj7A87T51' => 'lonja', 'Lj7P643T19' => 'lonja', 'Lsat_1_v5_gn_1_24401' => 'lsa', 'Lsat_1_v5_gn_4_162080' => 'lsa', 'Lsat_1_v5_gn_4_162120' => 'lsa', 'Lsat_1_v5_gn_8_94781' => 'lsa', 'Manes.03G069132' => 'mes', 'Manes.09G040500' => 'mes', 'Manes.12G112600' => 'mes', 'Manes.12G112700' => 'mes', 'Manes.13G114200' => 'mes', 'Manes.13G114300' => 'mes', 'Manes.13G114400' => 'mes', 'Manes.13G114500' => 'mes', 'Manes.13G114700' => 'mes', 'Manes.16G070900' => 'mes', 'Manes.18G046100' => 'mes', 'Mapoly0023s0137' => 'mpo', 'Mapoly0031s0148' => 'mpo', 'MBI01_g03363_MAGBIO' => 'mbi', 'MBI16_g06658_MAGBIO' => 'mbi', 'MBI16_g29133_MAGBIO' => 'mbi', 'MD02G1056400' => 'mdo', 'MD02G1181300' => 'mdo', 'MD02G1181500' => 'mdo', 'MD08G1084500' => 'mdo', 'MD08G1084800' => 'mdo', 'MD12G1051000' => 'mdo', 'MD14G1049700' => 'mdo', 'MD15G1070700' => 'mdo', 'MD15G1189400' => 'mdo', 'Medtr1g018320' => 'mtr', 'Medtr3g045440' => 'mtr', 'Medtr4g095310' => 'mtr', 'Medtr5g016150' => 'mtr', 'Medtr6g086560' => 'mtr', 'MELO3C007605.2' => 'cme', 'MELO3C009594.2' => 'cme', 'MELO3C010810.2' => 'cme', 'MELO3C020865.2' => 'cme', 'MELO3C025317.2' => 'cme', 'Migut.H00375' => 'egut', 'Migut.H00378' => 'egut', 'Migut.J01183' => 'egut', 'Migut.L00194' => 'egut', 'Migut.N02779' => 'egut', 'Migut.O00825' => 'egut', 'MSTRG.15363' => 'ama', 'MSTRG.24372' => 'ama', 'MSTRG.2840' => 'ama', 'MSTRG.6070' => 'ama', 'Nitab4.5_0000164g0080' => 'nta', 'Nitab4.5_0000175g0400' => 'nta', 'Nitab4.5_0000279g0060' => 'nta', 'Nitab4.5_0000604g0010' => 'nta', 'Nitab4.5_0000868g0070' => 'nta', 'Nitab4.5_0000868g0080' => 'nta', 'Nitab4.5_0001439g0160' => 'nta', 'Nitab4.5_0002038g0020' => 'nta', 'Nitab4.5_0003878g0030' => 'nta', 'Nitab4.5_0004400g0010' => 'nta', 'Nitab4.5_0004400g0040' => 'nta', 'Nitab4.5_0022963g0010' => 'nta', 'Nn1g04636' => 'nnu', 'Nn2g11813' => 'nnu', 'Nn2g15820' => 'nnu', 'Nn3g21723' => 'nnu', 'Nn4g22916' => 'nnu', 'Nn5g30496' => 'nnu', 'Nn5g30568' => 'nnu', 'Nn7g35897' => 'nnu', 'Nn8g39258' => 'nnu', 'Oeu011610.1' => 'oeu', 'Oeu016571.1' => 'oeu', 'Oeu016572.1' => 'oeu', 'Oeu016573.1' => 'oeu', 'Oeu022090.1' => 'oeu', 'Oeu022092.1' => 'oeu', 'Oeu034565.1' => 'oeu', 'Oeu037492.1' => 'oeu', 'Oeu037493.1' => 'oeu', 'Oeu037494.1' => 'oeu', 'Oeu040607.1' => 'oeu', 'Oeu050663.1' => 'oeu', 'Oeu053608.1' => 'oeu', 'Os01g0595600' => 'osa', 'Os03g0203200' => 'osa', 'Os03g0437600' => 'osa', 'Os05g0179900' => 'osa', 'Os05g0590300' => 'osa', 'Os11g0384789' => 'osa', 'Peaxi162Scf00081g01812' => 'pax', 'Peaxi162Scf00264g00415' => 'pax', 'Peaxi162Scf00264g00416' => 'pax', 'Peaxi162Scf00449g00010' => 'pax', 'Peaxi162Scf00552g00052' => 'pax', 'Peaxi162Scf00552g00514' => 'pax', 'Peaxi162Scf00560g00616' => 'pax', 'Peaxi162Scf01526g00020' => 'pax', 'PGR004G2221' => 'pgr', 'PGR083G1226' => 'pgr', 'PGR083G2747' => 'pgr', 'PGR102G0004' => 'pgr', 'PGR102G0389' => 'pgr', 'PGSC0003DMG400013017' => 'stu', 'PGSC0003DMG400013018' => 'stu', 'PGSC0003DMG400024945' => 'stu', 'PGSC0003DMG400024946' => 'stu', 'PGSC0003DMG400027428' => 'stu', 'PGSC0003DMG400041998' => 'stu', 'PGSC0003DMG400046851' => 'stu', 'Phvul.001G027400' => 'pvu', 'Phvul.002G013800' => 'pvu', 'Phvul.002G314800' => 'pvu', 'Phvul.003G237600' => 'pvu', 'Phvul.003G237900' => 'pvu', 'Phvul.004G160800' => 'pvu', 'Potri.002G118900' => 'ptr', 'Potri.005G145000' => 'ptr', 'Potri.006G155500' => 'ptr', 'Potri.007G052000' => 'ptr', 'Potri.014G016500' => 'ptr', 'Potri.016G062700' => 'ptr', 'Pp3c10_1460' => 'ppa', 'Pp3c12_8770' => 'ppa', 'Pp3c14_6110' => 'ppa', 'Pp3c16_8770' => 'ppa', 'Pp3c1_18010' => 'ppa', 'Pp3c1_18100' => 'ppa', 'Pp3c25_5350' => 'ppa', 'Pp3c26_13220' => 'ppa', 'Pp3c2_19340' => 'ppa', 'Pp3c3_11730' => 'ppa', 'Pp3c4_19700' => 'ppa', 'Pp3c4_32050' => 'ppa', 'Pp3c4_4910' => 'ppa', 'Pp3c5_16420' => 'ppa', 'Pp3c6_10610' => 'ppa', 'Prupe.1G423400' => 'ppe', 'Prupe.6G225000' => 'ppe', 'Prupe.7G085800' => 'ppe', 'Prupe.7G227500' => 'ppe', 'Psat1g039520' => 'psa', 'Psat2g169960' => 'psa', 'Psat3g014200' => 'psa', 'Psat4g083040' => 'psa', 'Psat6g018360' => 'psa', 'PSO063G4797' => 'pso', 'PSO541G3960' => 'pso', 'PSO541G4776' => 'pso', 'PSO675G8599' => 'pso', 'PSO782G4568' => 'pso', 'QL02p085999' => 'qlo', 'QL07p025541' => 'qlo', 'QL12p038011' => 'qlo', 'RcHm_v2.0_Chr2g0091021' => 'rch', 'RcHm_v2.0_Chr2g0107281' => 'rch', 'RcHm_v2.0_Chr3g0478651' => 'rch', 'RcHm_v2.0_Chr6g0309501' => 'rch', 'Rhsim03G0244600' => 'rsi', 'Rhsim04G0093400' => 'rsi', 'Rhsim06G0062100' => 'rsi', 'Rhsim08G0096200' => 'rsi', 'Rhsim10G0104400' => 'rsi', 'Sabra02G0093400' => 'sbr', 'Sabra06G0123600' => 'sbr', 'Sabra07G0045700' => 'sbr', 'Sabra14G0010300' => 'sbr', 'Sabra16G0064700' => 'sbr', 'SalBow6G0876' => 'sbo', 'SalBow6G1577' => 'sbo', 'SalBow8G2114' => 'sbo', 'Sc11g0005530' => 'sci', 'Sc14g0000320' => 'sci', 'Sc26g0004190' => 'sci', 'Sed0004532' => 'sed', 'Sed0008443' => 'sed', 'Sed0011363' => 'sed', 'Sed0021280' => 'sed', 'Sed0024273' => 'sed', 'SEGI_03772' => 'sgi', 'SEGI_20294' => 'sgi', 'SEGI_26080' => 'sgi', 'SEGI_26276' => 'sgi', 'SEGI_28042' => 'sgi', 'SEGI_29876' => 'sgi', 'SEGI_33615' => 'sgi', 'SGA_v2.0_scaffold104G30183' => 'sas', 'SGA_v2.0_scaffold12G06040' => 'sas', 'SGA_v2.0_scaffold143G35781' => 'sas', 'SGA_v2.0_scaffold15G07404' => 'sas', 'SGA_v2.0_scaffold166G38380' => 'sas', 'SGA_v2.0_scaffold1G00735_2' => 'sas', 'SGA_v2.0_scaffold1G00809' => 'sas', 'SGA_v2.0_scaffold1G00811' => 'sas', 'SGA_v2.0_scaffold21G09436' => 'sas', 'SGA_v2.0_scaffold21G09439_1' => 'sas', 'SGA_v2.0_scaffold21G09439_2' => 'sas', 'SGA_v2.0_scaffold229G43312' => 'sas', 'SGA_v2.0_scaffold28G11828' => 'sas', 'SGA_v2.0_scaffold29G12288' => 'sas', 'SGA_v2.0_scaffold29G12289' => 'sas', 'SGA_v2.0_scaffold29G12335' => 'sas', 'SGA_v2.0_scaffold390G50592' => 'sas', 'SGA_v2.0_scaffold390G50594_2' => 'sas', 'SGA_v2.0_scaffold45G17074' => 'sas', 'SGA_v2.0_scaffold62G21329_1' => 'sas', 'SGA_v2.0_scaffold62G21329_3' => 'sas', 'SGA_v2.0_scaffold62G21329_4' => 'sas', 'SGA_v2.0_scaffold69G23336' => 'sas', 'SGA_v2.0_scaffold8G04621' => 'sas', 'SGA_v2.0_scaffold8G04626_1' => 'sas', 'SGA_v2.0_scaffold8G04626_2' => 'sas', 'SHI01012' => 'shi', 'SMO118G0309' => 'smo', 'SMO147G0376' => 'smo', 'Solyc02g064760.3' => 'sly', 'Solyc02g064770.4' => 'sly', 'Solyc02g092760.3' => 'sly', 'Solyc02g092770.3' => 'sly', 'Solyc04g077860.4' => 'sly', 'Solyc05g018403.1' => 'sly', 'Solyc05g018413.1' => 'sly', 'Sopen02g014860' => 'spe', 'Sopen02g014870' => 'spe', 'Sopen02g037300' => 'spe', 'Sopen02g037310' => 'spe', 'Sopen04g031460' => 'spe', 'Sopen05g015210' => 'spe', 'Sp3g02960' => 'spa', 'Sp3g22190' => 'spa', 'Sp7g35150' => 'spa', 'TAR376G0317' => 'tar', 'TAR381G0072' => 'tar', 'TAR381G1541' => 'tar', 'TAR383G0865' => 'tar', 'TAR626G1167' => 'tar', 'TAR628G0754' => 'tar', 'TAR628G1696' => 'tar', 'THA.LOC104807610' => 'tha', 'THA.LOC104808748' => 'tha', 'THA.LOC104810647' => 'tha', 'THA.LOC104825775' => 'tha', 'Thecc.01G067700' => 'tca', 'Thecc.05G180300' => 'tca', 'Thecc.08G089500' => 'tca', 'Thecc.09G114400' => 'tca', 'Thhalv10002637m.g' => 'esa', 'Thhalv10021292m.g' => 'esa', 'Thhalv10025969m.g' => 'esa', 'TPR.G11939' => 'tpr', 'TPR.G20945' => 'tpr', 'TPR.G23887' => 'tpr', 'TPR.G31452' => 'tpr', 'TPR.G3785' => 'tpr', 'TWI09G0735' => 'twi', 'TWI09G0977' => 'twi', 'TWI12G0708' => 'twi', 'TWI34G1875' => 'twi', 'TWI63G1135' => 'twi', 'TWI74G1685' => 'twi', 'unitig_32.g10773' => 'ugi', 'unitig_578.g15932' => 'ugi', 'unitig_578.g15933' => 'ugi', 'unitig_744.g24480' => 'ugi', 'unitig_747.g21748' => 'ugi', 'vmacro05381' => 'vma', 'vmacro06200' => 'vma', 'vmacro17984' => 'vma', 'VMungo0251G2464' => 'vmu', 'VMungo0251G3172' => 'vmu', 'VMungo0251G3531' => 'vmu', 'VMungo0464G1140' => 'vmu', 'VMungo0540G0015' => 'vmu', 'VMungo0647G1793' => 'vmu', 'VMungo1215G0956' => 'vmu', 'VMungo1383G2793' => 'vmu', 'Zm00001eb007670' => 'zma', 'Zm00001eb020660' => 'zma', 'Zm00001eb161200' => 'zma', 'Zm00001eb170430' => 'zma', 'Zm00001eb175720' => 'zma', 'Zm00001eb283680' => 'zma', 'Zm00001eb297410' => 'zma', 'Zm00001eb357430' => 'zma', 'Zm00001eb370200' => 'zma', 'Zm00001eb393500' => 'zma', 'Zm00001eb400720' => 'zma' ) $gf_id = 'HOM05D000993' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000993' ) $data_identifier = 'HOM05D000993' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 6, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 15, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 26, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400720' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1